How to Link Merchant Account to QuickBooks Desktop? Your Comprehensive Guide


Step 1: Accessing QuickBooks Desktop

  • Launch QuickBooks Desktop application on your computer.
  • Ensure you're logged in as an administrator or user with sufficient permissions to make changes.

Step 2: Navigating to Company Preferences

  • Click on the "Edit" menu located at the top left corner of the screen.
  • From the drop-down menu, select "Preferences."
  • In the Preferences window, navigate to the "Payments" tab.

Step 3: Enabling Merchant Services

  • Within the Payments preferences, locate and select "Company Preferences."
  • Check the box that says "Enable Merchant Services."
  • Click on "Apply" and then "OK" to confirm your changes.

Step 4: Setting Up Merchant Account

  • Return to the Edit menu and select "Preferences" once again.
  • This time, choose "Payments" from the left sidebar.
  • Click on the "Set Up Merchant Account" button.
  • Follow the prompts to enter your merchant account details, including account provider, account ID, and any other required information.

Step 5: Verifying Account Integration

  • After entering the necessary details, click "OK" to save your settings.
  • QuickBooks Desktop will attempt to establish a connection with your merchant account provider.
  • Once the integration is successful, you will receive a confirmation message.

Step 6: Testing Transactions

  • To ensure everything is working smoothly, process a test transaction.
  • Create a sample invoice or sales receipt within QuickBooks Desktop.
  • Proceed to process the payment using the integrated merchant account.
  • Verify that the transaction appears correctly in both QuickBooks and your merchant account dashboard.

Step 7: Finalizing Setup

  • Once you've confirmed that transactions are being recorded accurately, your merchant account is successfully linked to QuickBooks Desktop.
  • Make any additional adjustments or configurations as needed based on your specific business requirements.
  • Remember to periodically review your payment settings to ensure they remain up-to-date and aligned with your business needs.

By following these simple steps, you can seamlessly link your merchant account to QuickBooks Desktop, streamlining your payment processes and improving efficiency in managing your finances.


This step-by-step guide provides a comprehensive walkthrough to help you effortlessly integrate your merchant account with QuickBooks Desktop. Following these instructions will enable you to efficiently manage your business's financial transactions within the familiar QuickBooks environment.

Ready to streamline your finances and take control of your business? Contact us today our team of QuickBooks experts lets us handle your bookkeeping and accounting needs with precision and expertise. Don't wait, take the first step towards financial clarity and success – reach out to us now!

Custom Accounting Solutions For Your Small Business

Contact Us Today